SpatialFeaturePlot install
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Description
Hi, I am recently running the SeuratData for spatial transcriptome tutorial, and I am encountering the following question. After I have coded as described in the tutorial
`devtools::install_github("satijalab/seurat", ref = "spatial")
library(Seurat)
devtools::install_github('satijalab/seurat-data')
library(SeuratData)
library(ggplot2)
library(patchwork)
library(dplyr)
InstallData("stxBrain")
?stxBrain
brain <- LoadData("stxBrain", type = "anterior1")
plot2 <- SpatialFeaturePlot(brain, features = "nCount_Spatial") +
theme(legend.position = "right")`
it appears that the function SpatialFeaturePlot does not exist, so I am wondering, where the function lies and how to install it. Thank you
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Research direction
The issue contains a SeuratData spatial transcriptome tutorial and reports that SpatialFeaturePlot is unavailable, but it names no file, test, or umap entry point. First verify whether the question belongs in lmcinnes/umap or in the Seurat/SeuratData documentation; done would require a clearly scoped documentation correction or routing decision.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 10/100