Issue with numba and umap
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Description
Hi there
I have an error I'm having trouble resolving. I can't seem to get
numba==0.45.0 and umap-learn<=0.3.8 to work together.
I keep getting the following error:
numba.errors.LoweringError: Failed in nopython mode pipeline (step: nopython mode backend)
Type of #4 arg mismatch: i1 != i32
File "../../miniconda3/envs/solo-sc/lib/python3.7/site-packages/umap/utils.py", line 131:
def make_heap(n_points, size):
<source elided>
"""
result = np.zeros((3, int(n_points), int(size)), dtype=np.float64)
^
Which seems to be similar to this issue:
https://github.com/lmcinnes/umap/issues/225
I've tried python 3.6.1, 3.6.7, and 3.7 none of which have helped the issue.
Any ideas about troubleshooting would be great. Other versions of Numba and umap-learn woork together for me but for a variety of other dependencies I'd really like the versions mentioned above to work together.
Please let me know if you have any thoughts
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the traceback location in umap/utils.py at line 131 and the linked issue #225. Reproduce the failure using Python 3.6 or 3.7 with numba==0.45.0 and umap-learn<=0.3.8, then compare the behavior with the other versions mentioned. Done means identifying whether this version combination is supported and documenting a confirmed resolution or incompatibility.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 18/100