lmcinnes / lmcinnes/enstop

HDBSCAN error stopping EnsembleTopics

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Dominant language
Python
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Description

The code from your homepage

from sklearn.datasets import fetch_20newsgroups
from sklearn.feature_extraction.text import CountVectorizer
from enstop import EnsembleTopics

news = fetch_20newsgroups(subset='all')
data = CountVectorizer().fit_transform(news.data)

model = EnsembleTopics(n_components=20).fit(data)
topics = model.components_
doc_vectors = model.embedding_

results in an error:
File hdbscan\\_hdbscan_tree.pyx:659, in hdbscan._hdbscan_tree.get_clusters()

File hdbscan\\_hdbscan_tree.pyx:733, in hdbscan._hdbscan_tree.get_clusters()

TypeError: 'numpy.float64' object cannot be interpreted as an integer

I have sklearn 1.3.0, Python 3.11.4

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First steps

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  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with the homepage example and reproduce the failure from EnsembleTopics(n_components=20).fit(data) using the reported Python 3.11.4 and scikit-learn 1.3.0 versions. Trace the HDBSCAN get_clusters() error and verify that the example completes without the reported TypeError.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
machine-learning
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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