Helper to analyse cohorts
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- Dominant language
- R
- Stars
- 4
- Forks
- 1
- PR merge metrics
- No merged PRs in 30d
Description
Create a helper to check cohorts of samples and studies.
- [ ] Check visits per patient.
Same number of visits per patient.
All patients the same number of visits...
- [ ] Check visits differences in time between visits.
Complicated perhaps set a fixed point and add a interval...
- [ ] Ideally check tubes/samples per visit.
The idea is to quickly find which samples do not pass the checks, missing ids, typos in dates or data or simply missing samples.
See the https://github.com/llrs/rutils/tree/dataset branch.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the dataset branch linked in the issue and identify how cohorts, patients, visits, studies, and samples are represented. Done should include checks for visit counts, time differences, and tubes or samples per visit, while reporting missing IDs, date or data errors, and missing samples.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100