About -pi and -pp
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- Dominant language
- Python
- Stars
- 16
- Forks
- 1
- PR merge metrics
- No merged PRs in 30d
Description
If I only want to backmap the results obtained using the Martini force field to an all-atom model, what command should I use? Why do I need to provide the files corresponding to -pi and -pp? Will the files provided by -pi and -pp replace the protein in my original system? If so, that’s not what I want. By the way, my system is also a membrane protein system. Thank you.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the command-line help and existing documentation for -pi and -pp, then trace how those inputs are used during backmapping. Document the command for backmapping Martini results without replacing the original protein, explain each flag's role, and clarify whether the supplied files replace system components.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100