How can I download "INDEX_core_data.2016" from PDBbind_2016_plain_text_index?
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Description
From FAST/data_util/parse_affinity_data.sh, you use the code "
grep -v '#' $path/PDBbind_2016_plain_text_index/index/INDEX_core_data.2016 | cut -f 1 -d ' ' > core.csv"
But, I can't find that "INDEX_core_data.2016" from PDBbind_2016_plain_text_index
I think that is missing,, There is no that file on PDBbind dataset v2016,, What should I do?
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Research direction
Start with FAST/data_util/parse_affinity_data.sh and inspect the referenced PDBbind_2016_plain_text_index/index path. Verify whether INDEX_core_data.2016 is absent from PDBbind v2016, then document the correct source or update the reference so the command can run.
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Assessment
- Tech stack
- shell
- Domain
- data
- Issue type
- Bug
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100