Virtual Console entries no longer found

I noticed with the latest version of the database that a bunch of Virtual Console entries weren't getting recognized by RetroArch's scanner - looking at the current revision I'm not entirely sure where these would be located; I thought that it might be this issue I found when building the Wii database...

/home/steam/libretro-super/retroarch/media/libretrodb/dat/Nintendo - Wii.dat:66349:6: fatal error: Unexpected '(' instead of key

I'm assuming this is a red herring though, as I'm not using the full WADs, just the extracted ROM with sound restored (so previously the files were recognized as "(VC) Sound Restored"). Files that are the same as the original SNES data are fine (Star Fox 1/2, Yoshi's Island). The last time this worked was with the SteamOS-Tools version, v1.6.1 with a couple patches for SDL_GameController support:

https://github.com/mdeguzis/SteamOS-Tools

Is there a separate database I should be looking at, or is there a bug I should track down?

Start with the Nintendo - Wii.dat parse error at line 66349 and the RetroArch scanner behavior for extracted Virtual Console ROMs. Compare the affected entries with the working SNES entries and the prior SteamOS-Tools v1.6.1 behavior; done means identifying whether the database or scanner prevents these entries from being recognized.