labBioinfo / labBioinfo/workflow
Id taxa from kraken report are not in ncbitaxa
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Description
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Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the mismatch between IDs in a Kraken report and ncbitaxa, then locate the workflow entry point that consumes the report. No files or tests are named in the issue, so first identify the relevant input and taxonomy-handling code. Done means the report IDs are correctly recognized by ncbitaxa and the behavior is covered by a reproducible check.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100