khanlab / khanlab/SPIMquant

log transform in masking fails for some (spinal) datasets

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#90 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
8
Forks
3
PR merge metrics
No merged PRs in 30d

Description

maybe make this optional or use otsu

Contributor guide

Open the contributing guide

Research direction

Locate the masking step that applies the log transform and reproduce the failure on the affected spinal datasets. Read how masking inputs are loaded and how the current transform is selected, then compare the observed behavior with the issue's optional-transform or Otsu suggestions. Done means masking works reliably for those datasets with a documented, testable behavior.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
computer-vision
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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