khanlab / khanlab/SPIMprep

Make the intensity_rescaling on a per-channel basis

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#5 1 comment 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
6
Forks
3
PR merge metrics
No merged PRs in 30d

Description

Could have it indexed by stain name perhaps..

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by locating where intensity_rescaling is defined and applied in the SPIMprep Snakemake workflow. Clarify how stain names and channels are represented, then define the expected per-channel behavior and verify that rescaling is applied independently for each channel.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
computer-vision
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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