khanlab / khanlab/SPIMprep

samples.tsv can have duplicates if same samples with different acq flags

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#30 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
6
Forks
3
PR merge metrics
No merged PRs in 30d

Description

Simple fix could be to remove duplicate rows

Contributor guide

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Research direction

Inspect the workflow step that creates samples.tsv and reproduce the case where the same sample has different acquisition flags. Confirm which rows are considered duplicates, then verify that the generated samples.tsv contains only one row for each duplicate sample case.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data-engineering
Issue type
Bug
Difficulty
2/5
Estimated time
1-3 hours
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
42/100

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