PRCRMP biodiversity notebook
@MathewBiddle is already working on this.
Since Oct 4, 2023.
- Dominant language
- Jupyter Notebook
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- 16
- Forks
- 15
- Avg merge
- 1h 39m
- Merged PRs (30d)
- 6
Description
If you are opening an issue regarding an existing notebook/code or the webpage just ignore the instructions below.
If you want to suggest a notebook for the code gallery please answer these questions:
- What is language(s) for used in the example?
- Is it focused on a particular module/software or an IOOS data service?
- Can you provide a minimum example of the expected code and results in a notebook?
Please provide a detailed description of the suggested example below:
Bathymetry contours on a map. Puerto Rico PRCRMP has a Demo of MBON portal. I would like to do something where we bring the coral data in and include bathymetry contours, somewhat repeating the PRCRMP demo - benthic portion of the demo. The product can be found at https://mbon.ioos.us/#data/1 in MBON portal. I don’t want to repeat the effort, but I’d like to do something with these data.
Example making contour map from netCDF data at NCEI:
import xarray as xr
url = 'https://www.ngdc.noaa.gov/thredds/dodsC/regional/northern_california_36_msl_2005.nc'
ds = xr.open_dataset(url)
ds.Band1.plot.contour(levels=50)
Initial steps:
- Ingest PRCRMP data from OBIS (using robis in R)
- Get bathymetry data (using Python)
- Translate R response into Pythonese.
- Make interactive graphics
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Assessment
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