ioos / ioos/ioos_code_lab

PRCRMP biodiversity notebook

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#24 2 comments 0 reactions 1 assignee View on GitHub

@MathewBiddle is already working on this.

Since Oct 4, 2023.

Notebook idea
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Jupyter Notebook
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Description

If you are opening an issue regarding an existing notebook/code or the webpage just ignore the instructions below.
If you want to suggest a notebook for the code gallery please answer these questions:

  • What is language(s) for used in the example?
  • Is it focused on a particular module/software or an IOOS data service?
  • Can you provide a minimum example of the expected code and results in a notebook?

Please provide a detailed description of the suggested example below:
Bathymetry contours on a map. Puerto Rico PRCRMP has a Demo of MBON portal. I would like to do something where we bring the coral data in and include bathymetry contours, somewhat repeating the PRCRMP demo - benthic portion of the demo. The product can be found at https://mbon.ioos.us/#data/1 in MBON portal. I don’t want to repeat the effort, but I’d like to do something with these data.
Example making contour map from netCDF data at NCEI:

import xarray as xr
url = 'https://www.ngdc.noaa.gov/thredds/dodsC/regional/northern_california_36_msl_2005.nc'
ds = xr.open_dataset(url)  
ds.Band1.plot.contour(levels=50)

Initial steps:

  1. Ingest PRCRMP data from OBIS (using robis in R)
  2. Get bathymetry data (using Python)
  3. Translate R response into Pythonese.
  4. Make interactive graphics

xref: https://github.com/ioos/notebooks_demos/issues/378

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