intermine / intermine/bluegenes
Viewing interaction tools (various, availability and bugs)
- Dominant language
- Clojure
- Stars
- 75
- Forks
- 59
- PR merge metrics
- No merged PRs in 30d
Description
I am wondering why this cytoscape view is not configured to support for "query results pages":

It would be really useful.
The only interaction view that is available for query result is:

but this visual is not very useful since the genes are not labelled you need to click on them individually, which defeats the object of a viewer ( it is quicker to look at a table).
Also, for this view if you have too many genes (I am not sure of the limit but a list of 38 was too large). You get a message

but if you respond "yes", it still does not render.
and finally it is not clear what the coluor sectoring on the nodes refer to. As soon as I slide the toggle the network view disappears, and I need to re run the query to get it to reappear.
Contributor guide
Research direction
Start by reproducing the Cytoscape view from a query-results page, including a result set of about 38 genes. Check the available interaction tools, missing gene labels, the failed render after confirming the size warning, and the network disappearing when the color-sectoring toggle changes; done means the view renders reliably and its controls are understandable.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- clojure
- Domain
- data-visualization, frontend
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100