intermine / intermine/bluegenes

Viewing interaction tools (various, availability and bugs)

Open
#837 2 comments 0 reactions 0 assignees View on GitHub
Dominant language
Clojure
Stars
75
Forks
59
PR merge metrics
No merged PRs in 30d

Description

I am wondering why this cytoscape view is not configured to support for "query results pages":

Screenshot 2022-09-15 at 12 40 36

It would be really useful.

The only interaction view that is available for query result is:

Screenshot 2022-09-15 at 12 53 42

but this visual is not very useful since the genes are not labelled you need to click on them individually, which defeats the object of a viewer ( it is quicker to look at a table).

Also, for this view if you have too many genes (I am not sure of the limit but a list of 38 was too large). You get a message
Screenshot 2022-09-15 at 12 47 23

but if you respond "yes", it still does not render.

and finally it is not clear what the coluor sectoring on the nodes refer to. As soon as I slide the toggle the network view disappears, and I need to re run the query to get it to reappear.

Contributor guide

Open the contributing guide

Research direction

Start by reproducing the Cytoscape view from a query-results page, including a result set of about 38 genes. Check the available interaction tools, missing gene labels, the failed render after confirming the size warning, and the network disappearing when the color-sectoring toggle changes; done means the view renders reliably and its controls are understandable.

Written by the indexing model from the issue text.

Assessment

Tech stack
clojure
Domain
data-visualization, frontend
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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