intermine / intermine/bluegenes
Enhance region search to search based on features not just regions
Open
enhancement
Region Search
- Dominant language
- Clojure
- Stars
- 75
- Forks
- 59
- PR merge metrics
- No merged PRs in 30d
Description
Allow for searching of user-defined genomic sequence around a defined feature. For example, sequence 200kb upstream of gene X.
https://github.com/intermine/intermine/issues/349
Contributor guide
Research direction
Start by reading the linked InterMine issue #349, then locate Bluegenes' region-search entry point; this issue names no file or test. Done means users can request sequence around a defined genomic feature, such as 200kb upstream of a gene, and receive the requested sequence.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- clojure
- Domain
- bioinformatics, search
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 25/100