intermine / intermine/InterMineR
setConstraints should support constraintLogic and codes
- Dominant language
- R
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- 18
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- 16
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Description
An important part of InterMine querying is the ability to set OR logic for constraints, as well as the default AND logic.
This code throws an error, because [neither code nor constraintLogic are permissible arguments in `setConstraints`](https://github.com/intermine/InterMineR/blob/master/R/setConstraints.R#L3):
```r
pancreasConstraint2 = setConstraints(
paths = c("Gene", "Gene.proteinAtlasExpression.level", "Gene.proteinAtlasExpression.level", "Gene.proteinAtlasExpression.tissue.name"),
operators = c("IN", rep("=", 2), "="),
values = list("PL_DiabetesGenes", "Medium", "High", "Pancreas"),
code = c("A", "B", "C", "D"),
constraintLogic = "A and (B or C) and D"
)
```
remove the invalid (but needed) code and constraintLogic arguments and it all works fine.
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