imagej / imagej/pyimagej

Remove warning in upcoming cellpose/stardist segmentation jupyter notebook

Open
#284 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
534
Forks
95
PR merge metrics
No merged PRs in 30d

Description

An in progress PR (https://github.com/imagej/pyimagej/pull/283) that brings conversion support for index images to ROIs also has a jupyter notebook detailing how to use it. This notebook has a warning stating that you need to use the `main` branch of PyImageJ to use the new features. Once we release the next version of PyImageJ (with these new features) we should remove this warning.

Contributor guide

No contributing guide indexed for this repository

Research direction

Find the Cellpose/Stardist segmentation Jupyter notebook and read the warning about using PyImageJ's main branch. Check PR #283 and the current PyImageJ release status first. Once the new features are released, remove the outdated warning and verify the notebook no longer tells users to use the main branch.

Written by the indexing model from the issue text.

Assessment

Tech stack
jupyter-notebook, python
Domain
documentation
Issue type
Documentation
Difficulty
2/5
Estimated time
1-3 hours
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
50/100

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