imagej / imagej/pyimagej

Passing file-like object to pyimagej

Open
#156 16 comments 0 reactions 0 assignees View on GitHub
question
Dominant language
Python
Stars
534
Forks
95
PR merge metrics
No merged PRs in 30d

Description

Hi, I am wondering if it's possible to support passing a file-like object with from python to imagej. The goal is to supporting lazy loading of large files that potentially backed by remote storage backend, for example using fsspec to create virtual file object from s3 server. I haven't try it, but would Java operate on the python file correctly? Say using bioformats.

Contributor guide

No contributing guide indexed for this repository

Research direction

The issue names no files, tests, or entry points. Start by examining pyimagej's Python-to-Java data handoff and how Bio-Formats consumes file inputs; define done as documented support for a Python file-like object, including a remotely backed lazy-loading example.

Written by the indexing model from the issue text.

Assessment

Tech stack
java, python
Domain
api
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.