imagej / imagej/imagej2

Coloc 2 log does not identify (by number, name or location) which ROI has been analyzed

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Description

Hi! I’m working with Coloc 2 to colocalize ROIs, I have no problem with that. My difficulty is that the log, paste below, does not identify the ROI analyzed.

RESULTS:
Coloc_Job_Name, Colocalization_of_C1-Edu-Bleo 1 34b.m.tif_versus_C2-Edu-Bleo 1 34b.tif_811804725
% zero-zero pixels, 2.28
% saturated ch1 pixels, 194.57
% saturated ch2 pixels, 20.41
Channel 1 Max, 255.000
Channel 2 Max, 255.000
Channel 1 Min, 0.000
Channel 2 Min, 0.000
Channel 1 Mean, 248.078
Channel 2 Mean, 26.026
Channel 1 Integrated (Sum) Intensity, 228480.000
Channel 2 Integrated (Sum) Intensity, 23970.000
Mask Type Used, mask image
Mask ID Used, 811804725
m (slope), -41.58
b (y-intercept), 10341.02
b to y-mean ratio, 397.33
Ch1 Max Threshold, 243.00
Ch2 Max Threshold, 255.00
Threshold regression, Costes
Pearson’s R value (no threshold), -0.03
Pearson’s R value (below threshold), -0.39
Pearson’s R value (above threshold), NaN
Manders’ M1 (Above zero intensity of Ch2), 0.100
Manders’ M2 (Above zero intensity of Ch1), 0.957
Manders’ tM1 (Above autothreshold of Ch2), 0.100
Manders’ tM2 (Above autothreshold of Ch1), 0.957

I would like the log to inform the number of the ROI analized or the name, or at least the location (x,y), otherwise I have no way to identify to which ROI the information given belongs. Or am I missing something? If so, please, explain to me where the identification is.

As far as I understand the only id given in the log is the mask ID. Nevertheless, in an aleatory number!!
HELP!!

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  3. Fork the repository and make your change on a branch.
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Research direction

Locate the Coloc 2 implementation that writes the RESULTS log and trace how the “Mask ID Used” value is produced. Run a multi-ROI Coloc 2 analysis using output like the example; done means each result identifies its ROI by number, name, or location.

Written by the indexing model from the issue text.

Assessment

Tech stack
java
Domain
computer-vision
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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