imagej / imagej/imagej-scripting

Crop_Confocal_Series.py does not work with all images

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Dominant language
Python
Stars
27
Forks
15
PR merge metrics
No merged PRs in 30d

Description

Open T1 Head, and run it. There is an exception.

Thanks to Aryeh Weiss for reporting this issue!

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by opening T1 Head and running Crop_Confocal_Series.py to reproduce and capture the exception. Then inspect the script around the failing operation and compare its behavior across different images. Done means the script runs without an exception on T1 Head and supports the image cases described by the issue.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
computer-vision
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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