imagej / imagej/imagej-ops

Attributed relational graphs for cell segmentation

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unscheduled
Dominant language
Java
Stars
94
Forks
44
PR merge metrics
No merged PRs in 30d

Description

From an [ImageJ forum thread](http://forum.imagej.net/t/cell-nucleus-segmentation/2116):

> There is an interesting procedure to segment clustered nuclei in fluorescence images: http://www.doc.ic.ac.uk/~sa1013/argraphs.html

The source is on GitHub at [sarslancs/argraphs](https://github.com/sarslancs/argraphs).

We could consider doing a language translation of this work to Ops, if anyone has a concrete use case for it.

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by reviewing the linked ImageJ forum discussion and the sarslancs/argraphs source to understand the proposed clustered-nuclei segmentation method. The issue names no target files or tests; progress would require a concrete use case and an agreed scope for translating the work to ImageJ Ops.

Written by the indexing model from the issue text.

Assessment

Tech stack
java
Domain
computer-vision
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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