imagej / imagej/imagej-common

AIOOB when displaying a dataset with one dimension

Open
#49 1 comment 0 reactions 0 assignees View on GitHub
bug
Dominant language
Java
Stars
12
Forks
15
PR merge metrics
No merged PRs in 30d

Description

Illustrated in this sample python script:

```
# @OpService ops
# @DisplayService display

blank = ops.createimg(100)

display.createDisplay(blank)
```

Which causes the following exception:

```
Caused by: java.lang.ArrayIndexOutOfBoundsException: 1
at net.imagej.display.DefaultDatasetView.xyPlane(DefaultDatasetView.java:340)
at net.imagej.display.DefaultDatasetView.autoscale(DefaultDatasetView.java:169)
at net.imagej.display.DefaultDatasetView.initializeView(DefaultDatasetView.java:515)
at net.imagej.display.DefaultDatasetView.rebuild(DefaultDatasetView.java:399)
at net.imagej.display.DefaultImageDisplay.rebuild(DefaultImageDisplay.java:136)
at net.imagej.display.DefaultImageDisplay.display(DefaultImageDisplay.java:274)
at org.scijava.display.DefaultDisplayService.createDisplay(DefaultDisplayService.java:221)
at org.scijava.display.DefaultDisplayService.createDisplay(DefaultDisplayService.java:207)
```

Which makes sense, since there is no "Y" for a y plane.

Contributor guide

No contributing guide indexed for this repository

Research direction

Start with the sample script and the stack trace in net.imagej.display.DefaultDatasetView, especially xyPlane, autoscale, initializeView, and rebuild. Trace how a one-dimensional dataset is handled during display initialization. Done means displaying the sample dataset without an ArrayIndexOutOfBoundsException.

Written by the indexing model from the issue text.

Assessment

Tech stack
java
Domain
data-visualization
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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