imagej / imagej/ImageJ

[Fiji] Plugin issues: Source file not up-to-date: Adjustable_Watershed.java, Measure_Roi_PA.java. ClassNotFound.

Open
#275 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
Java
Stars
786
Forks
267
PR merge metrics
No merged PRs in 30d

Description

I’m an undergraduate researcher at WSU. I have Fiji (ImageJ 1.54p, Java 27.0.7 (64-bit), 6/23/25), and I’m trying to install Adjustable_Watershed ([source](https://imagej.net/plugins/adjustable-watershed/adjustable-watershed)) and Measure_Roi ([source](https://www.optinav.info/Measure-Roi.htm)).

For the Measure_Roi plugin, I tried running a new script in Fiji with the .java file, and got an error message that said the source file wasn’t up to date ([link](https://gist.github.com/jacksoneschroeder/8381a7886419ee79bc0a9817d15d968a) to Gist).

I tried downloading the two Measure Roi .class files and putting them in the Fiji plugins folder. When I click Plugins > Measure Roi PA, I get a pop-up error that says “Plugin or class not found: ‘Measure_Roi_PA’ (java.lang.ClassNotFoundException: Measure_Roi_PA)”.

I’ve had virtually identical errors with the Adjustable_Watershed.java ([link](https://gist.github.com/jacksoneschroeder/589fe89a4ba758795a4124b49e9f6bba) to Gist) and Adjustable_Watershed.class, so I think both of these plugins might be out of date for my version of Fiji.

Both these plugins work for me in ImageJ.

I just emailed Bob Dougherty, the developer of the Measure_Roi plugin, for advice. I'd also appreciate any advice the GitHub community can provide!

Thanks so much!

-Jackson

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by reviewing the linked Adjustable_Watershed.java and Measure_Roi_PA.java sources, along with both error Gists, and reproduce the ClassNotFound and out-of-date-source errors in the reported Fiji version. Compare the behavior with ImageJ, then determine whether a repository change is in scope or whether the result should be compatibility guidance for these external plugins.

Written by the indexing model from the issue text.

Assessment

Tech stack
java
Domain
computer-vision
Issue type
Bug
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.