imagej / imagej/ImageJ

Can import image sequence use the z resolution provided by the image if the images are z-stacks?

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Dominant language
Java
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Forks
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Description

Right now I have series of images, image-0.tif, image-1.tif, image-2.tif, etc. Where each image is a 2 channel z-stack. When I import the image sequence, the x and y dimensions are set correctly, but the z dimension is set as the x and y dimension. It would be helpful if the z dimension was set from one of the image stacks. It would also be nice if the channels were set too.

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Research direction

Start by tracing the image-sequence import workflow described in the issue. Check how TIFF z-stacks and channels are currently represented when the sequence is imported. Done means the imported z dimension comes from the image stack and the channels are preserved correctly.

Written by the indexing model from the issue text.

Assessment

Tech stack
java
Domain
computer-vision
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
38/100

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