iRNA-COSI / iRNA-COSI/APAeval

refactor: Singularity from conda environment might cause errors

Open
#418 1 comment 1 reaction 0 assignees View on GitHub
low priority
Dominant language
Python
Stars
16
Forks
14
PR merge metrics
No merged PRs in 30d

Description

The current APAeval conda environment contains Singularity:
https://github.com/iRNA-COSI/APAeval/blob/d4e7c142185f5e8ce45b94ee66510a3cc665a9dd/apaeval_env.yaml#L15

For some reason, e.g. no root access, the Singularity version from conda **can** lead to execution errors.

This can fixed quite easily though:
- Manually remove Singularity from this conda environment and install/use an own version independently. This fix should then be highlighted by an additional note in the install instructions.
- Or remove Singularity from the conda environment (i.e. line 15 in `apaeval_env.yaml`) and require independent installation thereof. Again, this should be reflected in the documentation.

The first fix might be preferred if the error occurs rarely and the second one if it occurs often.

Contributor guide

No contributing guide indexed for this repository

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.