feat(Summary workflows): new SWF for relative usage quantification
- Dominant language
- Python
- Stars
- 16
- Forks
- 14
- PR merge metrics
- No merged PRs in 30d
Description
#332 was dismissed, instead we'll have an additional SWF for relative quantification
- Check #373 for input file formats
- Check #301 and new issues for filtering of GT
- Check #413 for a discussion on how to define an identifier for terminal exons & PAS from ground truth & prediction
- Check #399 for proof-of-concept implementation of filtering, site matching & metric calculation
- Check #278 for an initial discussion on how to calculate relative expression, qualifying tools etc.
- Check #413 for a https://github.com/iRNA-COSI/APAeval/issues/413
### Create new issues
* [ ] relative usage metrics specifications
* [ ] relative usage metric calculations
* [ ] relative usage swf backbone
* [ ] relative usage swf testing
~~Implementations are still blocked by #374~~
Contributor guide
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Research direction
Start by reading the linked discussions in #373, #301, #413, #399, and #278, then confirm whether #374 still blocks implementation. The work is split into specifications, relative-usage metric calculations, an SWF backbone, and testing; it is done when each of these has a defined implementation and validation path.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100