iRNA-COSI / iRNA-COSI/APAeval

feat(Summary workflow): Utils script/module to filter and convert ground truth TPM data to be compatible with relative quantification benchmark

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#301 3 comments 0 reactions 3 assignees Claimed by @yuukiiwa View on GitHub
high priority
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Python
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Description

We're adding a new quantification challenge relative expression output. However, since the quantification challenge originally outputs TPM values, the ground truth data was also in TPM. Hence, we need to convert the ground truth data from TPM to relative expression to be compatible with the new quantification challenge output

Depends on relative expression implementation: https://github.com/iRNA-COSI/APAeval/issues/277

Estimate: 4h

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