iRNA-COSI / iRNA-COSI/APAeval

docs: prefer relative paths if possible

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documentation good first issue low priority
Dominant language
Python
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Description

Update the documentation for using relative paths, for example in sample tables or configuration files, when possible. This might be necessary once the workflows are run on a cluster. Also, running the test files are easier when no absolute paths need to be manually adjusted.
For cases when relative paths are not possible use the absolute paths and document on it in the respective readme.

Places where documentation might need be adjusted:

- execution workflow readme
- execution workflow template
- PR review guide for exeuction workflows

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