hpc / hpc/mpifileutils

getting low speed

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Dominant language
C
Stars
200
Forks
85
Avg merge
3d 21h
Merged PRs (30d)
2

Description

Hello,

I am copying files between from lustre file system to ceph storage over infiniband via slurm job. But i am getting very low speed.

Below is the slurm job.
`#!/bin/bash

#SBATCH --job-name=user_copy
#SBATCH --partition=THK_CPU
#SBATCH --nodelist=mlqhpc-cpu-node15
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=40
#SBATCH --hint=nomultithread
#SBATCH --time=0-00:00:00
#SBATCH --output=user_copy_%j.out
#SBATCH --error=user_copy_%j.err

Load the mpifileutils module

module load custom/mpifileutils/0.12.1

Define source and destination

SRC=/mnt/lustre/source_user
DEST=/users/

time srun dcp --progress 600 $SRC $DEST`

Below is the output results

[2025-10-29T16:51:08] Data: 65.783 GiB (70634049927 bytes) [2025-10-29T16:51:08] Rate: 8.415 MiB/s (70634049927 bytes in 8004.996 seconds) [2025-10-29T16:51:08] Started: Oct-29-2025,14:37:43 [2025-10-29T16:51:08] Completed: Oct-29-2025,16:51:08 [2025-10-29T16:51:08] Seconds: 8005.003 [2025-10-29T16:51:08] Items: 226505 [2025-10-29T16:51:08] Directories: 19478 [2025-10-29T16:51:08] Files: 200806 [2025-10-29T16:51:08] Links: 6221 [2025-10-29T16:51:08] Data: 65.783 GiB (70634049927 bytes) [2025-10-29T16:51:08] Rate: 8.415 MiB/s (70634049927 bytes in 8005.003 seconds) [2025-10-29T16:51:08] Updated 226505 items in 1622.983 secs (139.561 items/sec) done [2025-10-29T16:51:08] Updated 226505 items in 1622.983 seconds (139.561 items/sec) [2025-10-29T16:51:08] Syncing directory updates to disk. [2025-10-29T16:51:08] Sync completed in 0.000 seconds. [2025-10-29T16:51:08] Started: Oct-29-2025,14:37:43 [2025-10-29T16:51:08] Completed: Oct-29-2025,16:51:08 [2025-10-29T16:51:08] Seconds: 8005.287 [2025-10-29T16:51:08] Items: 226505 [2025-10-29T16:51:08] Directories: 19478 [2025-10-29T16:51:08] Files: 200806 [2025-10-29T16:51:08] Links: 6221 [2025-10-29T16:51:08] Data: 65.783 GiB (70634049927 bytes) [2025-10-29T16:51:08] Rate: 8.415 MiB/s (70634049927 bytes in 8005.287 seconds)

The same data were copied in just 30 mints with rsync. I am avoiding the rsync because its putting load on the lustre MDS.

need you help in this matter.

cheers,

Ihsan

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with the reported dcp command and Slurm job, then review the mpifileutils dcp implementation and performance documentation. Reproduce the transfer if the Lustre, Ceph, and InfiniBand environment is available, comparing the reported timings and item counts; done means identifying a project-side cause or documenting the required configuration and evidence.

Written by the indexing model from the issue text.

Assessment

Tech stack
c, shell
Domain
hpc, performance
Issue type
Bug
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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