configure: error: --with-lustre was given, <lustre/lustre_user.h> not found
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Description
Hello,
I am trying to test with ior but am having issues in set up. I am using AWS Parallel Cluster and following this tutorial: https://aws.amazon.com/blogs/storage/building-an-hpc-cluster-with-aws-parallelcluster-and-amazon-fsx-for-lustre/ - I get to this point:
#!/bin/bash
# load MPI wrappers
module load openmpi
mkdir -p /shared/hpc/performance/ior
git clone https://github.com/hpc/ior.git
cd ior
git checkout 3.2.1
./bootstrap
./configure --with-mpiio --with-lustre --prefix=/shared/hpc/performance/ior
make
sudo make install
But the ./configure script fails with this error: configure: error: --with-lustre was given, <lustre/lustre_user.h> not found. I've tried on branch rc, main, and 3.2.1.
Full contents of the log:
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by ior configure 4.1.0+dev, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure --with-mpiio --with-lustre --prefix=/mnt/fsx/home/hpc/performance/ior
## --------- ##
## Platform. ##
## --------- ##
hostname = ***
uname -m = x86_64
uname -r = 5.15.0-1027-aws
uname -s = Linux
uname -v = #31~20.04.1-Ubuntu SMP Thu Dec 1 19:56:24 UTC 2022
/usr/bin/uname -p = x86_64
/bin/uname -X = unknown
/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /snap/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2412: checking metadata
configure:2585: result: yes
configure:2627: checking build system type
configure:2641: result: x86_64-pc-linux-gnu
configure:2661: checking host system type
configure:2674: result: x86_64-pc-linux-gnu
configure:2712: checking for a BSD-compatible install
configure:2780: result: /usr/bin/install -c
configure:2791: checking whether build environment is sane
configure:2846: result: yes
configure:2995: checking for a thread-safe mkdir -p
configure:3034: result: /usr/bin/mkdir -p
configure:3041: checking for gawk
configure:3057: found /usr/bin/gawk
configure:3068: result: gawk
configure:3079: checking whether make sets $(MAKE)
configure:3101: result: yes
configure:3130: checking whether make supports nested variables
configure:3147: result: yes
configure:3275: checking whether make supports nested variables
configure:3292: result: yes
configure:3304: checking whether to enable maintainer-specific portions of Makefiles
configure:3313: result: no
configure:3345: checking whether make supports the include directive
configure:3360: make -f confmf.GNU && cat confinc.out
this is the am__doit target
configure:3363: $? = 0
configure:3382: result: yes (GNU style)
configure:3460: checking for mpicc
configure:3476: found /usr/bin/mpicc
configure:3487: result: mpicc
configure:3561: checking for gcc
configure:3588: result: mpicc
configure:3817: checking for C compiler version
configure:3826: mpicc --version >&5
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:3837: $? = 0
configure:3826: mpicc -v >&5
Using built-in specs.
COLLECT_GCC=/usr/bin/gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.4.0-1ubuntu1~20.04.1' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-Av3uEd/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.4.0 (Ubuntu 9.4.0-1ubuntu1~20.04.1)
configure:3837: $? = 0
configure:3826: mpicc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3837: $? = 1
configure:3826: mpicc -qversion >&5
gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:3837: $? = 1
configure:3857: checking whether the C compiler works
configure:3879: mpicc conftest.c >&5
configure:3883: $? = 0
configure:3931: result: yes
configure:3934: checking for C compiler default output file name
configure:3936: result: a.out
configure:3942: checking for suffix of executables
configure:3949: mpicc -o conftest conftest.c >&5
configure:3953: $? = 0
configure:3975: result:
configure:3997: checking whether we are cross compiling
configure:4005: mpicc -o conftest conftest.c >&5
configure:4009: $? = 0
configure:4016: ./conftest
configure:4020: $? = 0
configure:4008: result: no
configure:4013: checking for suffix of object files
configure:4035: mpicc -c conftest.c >&5
configure:4039: $? = 0
configure:4060: result: o
configure:4064: checking whether we are using the GNU C compiler
configure:4083: mpicc -c conftest.c >&5
configure:4083: $? = 0
configure:4092: result: yes
configure:4101: checking whether mpicc accepts -g
configure:4121: mpicc -c -g conftest.c >&5
configure:4121: $? = 0
configure:4162: result: yes
configure:4179: checking for mpicc option to accept ISO C89
configure:4242: mpicc -c -g -O2 conftest.c >&5
configure:4242: $? = 0
configure:4255: result: none needed
configure:4280: checking whether mpicc understands -c and -o together
configure:4302: mpicc -c conftest.c -o conftest2.o
configure:4305: $? = 0
configure:4302: mpicc -c conftest.c -o conftest2.o
configure:4305: $? = 0
configure:4317: result: yes
configure:4336: checking dependency style of mpicc
configure:4447: result: gcc3
configure:4489: checking for function MPI_Init
configure:4514: mpicc -o conftest -g -O2 conftest.c >&5
configure:4514: $? = 0
configure:4521: result: yes
configure:4532: checking for mpi.h
configure:4545: mpicc -c -g -O2 conftest.c >&5
configure:4545: $? = 0
configure:4546: result: yes
configure:4631: checking for ranlib
configure:4647: found /usr/bin/ranlib
configure:4658: result: ranlib
configure:4681: checking for mpicc option to accept ISO C99
configure:4830: mpicc -c -g -O2 conftest.c >&5
configure:4830: $? = 0
configure:4843: result: none needed
configure:4867: checking how to run the C preprocessor
configure:4898: mpicc -E conftest.c
configure:4898: $? = 0
configure:4912: mpicc -E conftest.c
conftest.c:14:10: fatal error: ac_nonexistent.h: No such file or directory
14 | #include <ac_nonexistent.h>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:4912: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:4937: result: mpicc -E
configure:4957: mpicc -E conftest.c
configure:4957: $? = 0
configure:4971: mpicc -E conftest.c
conftest.c:14:10: fatal error: ac_nonexistent.h: No such file or directory
14 | #include <ac_nonexistent.h>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:4971: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:5000: checking for grep that handles long lines and -e
configure:5058: result: /usr/bin/grep
configure:5063: checking for egrep
configure:5125: result: /usr/bin/grep -E
configure:5130: checking for ANSI C header files
configure:5150: mpicc -c -g -O2 conftest.c >&5
configure:5150: $? = 0
configure:5223: mpicc -o conftest -g -O2 conftest.c >&5
configure:5223: $? = 0
configure:5223: ./conftest
configure:5223: $? = 0
configure:5234: result: yes
configure:5247: checking for sys/types.h
configure:5247: mpicc -c -g -O2 conftest.c >&5
configure:5247: $? = 0
configure:5247: result: yes
configure:5247: checking for sys/stat.h
configure:5247: mpicc -c -g -O2 conftest.c >&5
configure:5247: $? = 0
configure:5247: result: yes
configure:5247: checking for stdlib.h
configure:5247: mpicc -c -g -O2 conftest.c >&5
configure:5247: $? = 0
configure:5247: result: yes
configure:5247: checking for string.h
configure:5247: mpicc -c -g -O2 conftest.c >&5
configure:5247: $? = 0
configure:5247: result: yes
configure:5247: checking for memory.h
configure:5247: mpicc -c -g -O2 conftest.c >&5
configure:5247: $? = 0
configure:5247: result: yes
configure:5247: checking for strings.h
configure:5247: mpicc -c -g -O2 conftest.c >&5
configure:5247: $? = 0
configure:5247: result: yes
configure:5247: checking for inttypes.h
configure:5247: mpicc -c -g -O2 conftest.c >&5
configure:5247: $? = 0
configure:5247: result: yes
configure:5247: checking for stdint.h
configure:5247: mpicc -c -g -O2 conftest.c >&5
configure:5247: $? = 0
configure:5247: result: yes
configure:5247: checking for unistd.h
configure:5247: mpicc -c -g -O2 conftest.c >&5
configure:5247: $? = 0
configure:5247: result: yes
configure:5262: checking fcntl.h usability
configure:5262: mpicc -c -g -O2 conftest.c >&5
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking fcntl.h presence
configure:5262: mpicc -E conftest.c
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking for fcntl.h
configure:5262: result: yes
configure:5262: checking libintl.h usability
configure:5262: mpicc -c -g -O2 conftest.c >&5
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking libintl.h presence
configure:5262: mpicc -E conftest.c
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking for libintl.h
configure:5262: result: yes
configure:5262: checking for stdlib.h
configure:5262: result: yes
configure:5262: checking for string.h
configure:5262: result: yes
configure:5262: checking for strings.h
configure:5262: result: yes
configure:5262: checking sys/ioctl.h usability
configure:5262: mpicc -c -g -O2 conftest.c >&5
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking sys/ioctl.h presence
configure:5262: mpicc -E conftest.c
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking for sys/ioctl.h
configure:5262: result: yes
configure:5262: checking sys/param.h usability
configure:5262: mpicc -c -g -O2 conftest.c >&5
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking sys/param.h presence
configure:5262: mpicc -E conftest.c
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking for sys/param.h
configure:5262: result: yes
configure:5262: checking sys/statfs.h usability
configure:5262: mpicc -c -g -O2 conftest.c >&5
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking sys/statfs.h presence
configure:5262: mpicc -E conftest.c
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking for sys/statfs.h
configure:5262: result: yes
configure:5262: checking sys/statvfs.h usability
configure:5262: mpicc -c -g -O2 conftest.c >&5
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking sys/statvfs.h presence
configure:5262: mpicc -E conftest.c
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking for sys/statvfs.h
configure:5262: result: yes
configure:5262: checking sys/time.h usability
configure:5262: mpicc -c -g -O2 conftest.c >&5
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking sys/time.h presence
configure:5262: mpicc -E conftest.c
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking for sys/time.h
configure:5262: result: yes
configure:5262: checking for sys/param.h
configure:5262: result: yes
configure:5262: checking sys/mount.h usability
configure:5262: mpicc -c -g -O2 conftest.c >&5
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking sys/mount.h presence
configure:5262: mpicc -E conftest.c
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking for sys/mount.h
configure:5262: result: yes
configure:5262: checking for unistd.h
configure:5262: result: yes
configure:5262: checking wchar.h usability
configure:5262: mpicc -c -g -O2 conftest.c >&5
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking wchar.h presence
configure:5262: mpicc -E conftest.c
configure:5262: $? = 0
configure:5262: result: yes
configure:5262: checking for wchar.h
configure:5262: result: yes
configure:5262: checking hdfs.h usability
configure:5262: mpicc -c -g -O2 conftest.c >&5
conftest.c:71:10: fatal error: hdfs.h: No such file or directory
71 | #include <hdfs.h>
| ^~~~~~~~
compilation terminated.
configure:5262: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_LIBINTL_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_STATFS_H 1
| #define HAVE_SYS_STATVFS_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_MOUNT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_WCHAR_H 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <hdfs.h>
configure:5262: result: no
configure:5262: checking hdfs.h presence
configure:5262: mpicc -E conftest.c
conftest.c:38:10: fatal error: hdfs.h: No such file or directory
38 | #include <hdfs.h>
| ^~~~~~~~
compilation terminated.
configure:5262: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_LIBINTL_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_STATFS_H 1
| #define HAVE_SYS_STATVFS_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_MOUNT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_WCHAR_H 1
| /* end confdefs.h. */
| #include <hdfs.h>
configure:5262: result: no
configure:5262: checking for hdfs.h
configure:5262: result: no
configure:5262: checking beegfs/beegfs.h usability
configure:5262: mpicc -c -g -O2 conftest.c >&5
conftest.c:71:10: fatal error: beegfs/beegfs.h: No such file or directory
71 | #include <beegfs/beegfs.h>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
configure:5262: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_LIBINTL_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_STATFS_H 1
| #define HAVE_SYS_STATVFS_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_MOUNT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_WCHAR_H 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <beegfs/beegfs.h>
configure:5262: result: no
configure:5262: checking beegfs/beegfs.h presence
configure:5262: mpicc -E conftest.c
conftest.c:38:10: fatal error: beegfs/beegfs.h: No such file or directory
38 | #include <beegfs/beegfs.h>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
configure:5262: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_LIBINTL_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_STATFS_H 1
| #define HAVE_SYS_STATVFS_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_MOUNT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_WCHAR_H 1
| /* end confdefs.h. */
| #include <beegfs/beegfs.h>
configure:5262: result: no
configure:5262: checking for beegfs/beegfs.h
configure:5262: result: no
configure:5274: checking for size_t
configure:5274: mpicc -c -g -O2 conftest.c >&5
configure:5274: $? = 0
configure:5274: mpicc -c -g -O2 conftest.c >&5
conftest.c: In function 'main':
conftest.c:74:21: error: expected expression before ')' token
74 | if (sizeof ((size_t)))
| ^
configure:5274: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_LIBINTL_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_STATFS_H 1
| #define HAVE_SYS_STATVFS_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_MOUNT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_WCHAR_H 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((size_t)))
| return 0;
| ;
| return 0;
| }
configure:5274: result: yes
configure:5290: checking for sysconf
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for gettimeofday
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for memset
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
conftest.c:63:6: warning: conflicting types for built-in function 'memset'; expected 'void *(void *, int, long unsigned int)' [-Wbuiltin-declaration-mismatch]
63 | char memset ();
| ^~~~~~
conftest.c:51:1: note: 'memset' is declared in header '<string.h>'
50 | # include <limits.h>
51 | #else
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for mkdir
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for pow
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
conftest.c:65:6: warning: conflicting types for built-in function 'pow'; expected 'double(double, double)' [-Wbuiltin-declaration-mismatch]
65 | char pow ();
| ^~~
conftest.c:53:1: note: 'pow' is declared in header '<math.h>'
52 | # include <limits.h>
53 | #else
/usr/bin/ld: /tmp/ccCbBoho.o: in function `main':
/mnt/fsx/home/hpc/performance/ior/conftest.c:76: undefined reference to `pow'
collect2: error: ld returned 1 exit status
configure:5290: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_LIBINTL_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_STATFS_H 1
| #define HAVE_SYS_STATVFS_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_MOUNT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_WCHAR_H 1
| #define HAVE_SYSCONF 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_MEMSET 1
| #define HAVE_MKDIR 1
| /* end confdefs.h. */
| /* Define pow to an innocuous variant, in case <limits.h> declares pow.
| For example, HP-UX 11i <limits.h> declares gettimeofday. */
| #define pow innocuous_pow
|
| /* System header to define __stub macros and hopefully few prototypes,
| which can conflict with char pow (); below.
| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
| <limits.h> exists even on freestanding compilers. */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef pow
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char pow ();
| /* The GNU C library defines this for functions which it implements
| to always fail with ENOSYS. Some functions are actually named
| something starting with __ and the normal name is an alias. */
| #if defined __stub_pow || defined __stub___pow
| choke me
| #endif
|
| int
| main ()
| {
| return pow ();
| ;
| return 0;
| }
configure:5290: result: no
configure:5290: checking for putenv
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for realpath
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for regcomp
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for sqrt
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
conftest.c:68:6: warning: conflicting types for built-in function 'sqrt'; expected 'double(double)' [-Wbuiltin-declaration-mismatch]
68 | char sqrt ();
| ^~~~
conftest.c:56:1: note: 'sqrt' is declared in header '<math.h>'
55 | # include <limits.h>
56 | #else
/usr/bin/ld: /tmp/ccac10nb.o: in function `main':
/mnt/fsx/home/hpc/performance/ior/conftest.c:79: undefined reference to `sqrt'
collect2: error: ld returned 1 exit status
configure:5290: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_LIBINTL_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_STATFS_H 1
| #define HAVE_SYS_STATVFS_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_MOUNT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_WCHAR_H 1
| #define HAVE_SYSCONF 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_MEMSET 1
| #define HAVE_MKDIR 1
| #define HAVE_PUTENV 1
| #define HAVE_REALPATH 1
| #define HAVE_REGCOMP 1
| /* end confdefs.h. */
| /* Define sqrt to an innocuous variant, in case <limits.h> declares sqrt.
| For example, HP-UX 11i <limits.h> declares gettimeofday. */
| #define sqrt innocuous_sqrt
|
| /* System header to define __stub macros and hopefully few prototypes,
| which can conflict with char sqrt (); below.
| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
| <limits.h> exists even on freestanding compilers. */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef sqrt
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char sqrt ();
| /* The GNU C library defines this for functions which it implements
| to always fail with ENOSYS. Some functions are actually named
| something starting with __ and the normal name is an alias. */
| #if defined __stub_sqrt || defined __stub___sqrt
| choke me
| #endif
|
| int
| main ()
| {
| return sqrt ();
| ;
| return 0;
| }
configure:5290: result: no
configure:5290: checking for strcasecmp
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
conftest.c:68:6: warning: conflicting types for built-in function 'strcasecmp'; expected 'int(const char *, const char *)' [-Wbuiltin-declaration-mismatch]
68 | char strcasecmp ();
| ^~~~~~~~~~
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for strchr
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
conftest.c:69:6: warning: conflicting types for built-in function 'strchr'; expected 'char *(const char *, int)' [-Wbuiltin-declaration-mismatch]
69 | char strchr ();
| ^~~~~~
conftest.c:57:1: note: 'strchr' is declared in header '<string.h>'
56 | # include <limits.h>
57 | #else
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for strerror
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for strncasecmp
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
conftest.c:71:6: warning: conflicting types for built-in function 'strncasecmp'; expected 'int(const char *, const char *, long unsigned int)' [-Wbuiltin-declaration-mismatch]
71 | char strncasecmp ();
| ^~~~~~~~~~~
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for strstr
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
conftest.c:72:6: warning: conflicting types for built-in function 'strstr'; expected 'char *(const char *, const char *)' [-Wbuiltin-declaration-mismatch]
72 | char strstr ();
| ^~~~~~
conftest.c:60:1: note: 'strstr' is declared in header '<string.h>'
59 | # include <limits.h>
60 | #else
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for uname
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for statfs
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
configure:5290: $? = 0
configure:5290: result: yes
configure:5290: checking for statvfs
configure:5290: mpicc -o conftest -g -O2 conftest.c >&5
configure:5290: $? = 0
configure:5290: result: yes
configure:5299: checking for library containing sqrt
configure:5330: mpicc -o conftest -g -O2 conftest.c >&5
conftest.c:60:6: warning: conflicting types for built-in function 'sqrt'; expected 'double(double)' [-Wbuiltin-declaration-mismatch]
60 | char sqrt ();
| ^~~~
conftest.c:1:1: note: 'sqrt' is declared in header '<math.h>'
1 | /* confdefs.h */
/usr/bin/ld: /tmp/ccmiCl9k.o: in function `main':
/mnt/fsx/home/hpc/performance/ior/conftest.c:64: undefined reference to `sqrt'
collect2: error: ld returned 1 exit status
configure:5330: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_LIBINTL_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_STATFS_H 1
| #define HAVE_SYS_STATVFS_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_MOUNT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_WCHAR_H 1
| #define HAVE_SYSCONF 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_MEMSET 1
| #define HAVE_MKDIR 1
| #define HAVE_PUTENV 1
| #define HAVE_REALPATH 1
| #define HAVE_REGCOMP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRCHR 1
| #define HAVE_STRERROR 1
| #define HAVE_STRNCASECMP 1
| #define HAVE_STRSTR 1
| #define HAVE_UNAME 1
| #define HAVE_STATFS 1
| #define HAVE_STATVFS 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char sqrt ();
| int
| main ()
| {
| return sqrt ();
| ;
| return 0;
| }
configure:5330: mpicc -o conftest -g -O2 conftest.c -lm >&5
conftest.c:60:6: warning: conflicting types for built-in function 'sqrt'; expected 'double(double)' [-Wbuiltin-declaration-mismatch]
60 | char sqrt ();
| ^~~~
conftest.c:1:1: note: 'sqrt' is declared in header '<math.h>'
1 | /* confdefs.h */
configure:5330: $? = 0
configure:5347: result: -lm
configure:5373: checking gpfs.h usability
configure:5373: mpicc -c -g -O2 conftest.c >&5
conftest.c:86:10: fatal error: gpfs.h: No such file or directory
86 | #include <gpfs.h>
| ^~~~~~~~
compilation terminated.
configure:5373: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_LIBINTL_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_STATFS_H 1
| #define HAVE_SYS_STATVFS_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_MOUNT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_WCHAR_H 1
| #define HAVE_SYSCONF 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_MEMSET 1
| #define HAVE_MKDIR 1
| #define HAVE_PUTENV 1
| #define HAVE_REALPATH 1
| #define HAVE_REGCOMP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRCHR 1
| #define HAVE_STRERROR 1
| #define HAVE_STRNCASECMP 1
| #define HAVE_STRSTR 1
| #define HAVE_UNAME 1
| #define HAVE_STATFS 1
| #define HAVE_STATVFS 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <gpfs.h>
configure:5373: result: no
configure:5373: checking gpfs.h presence
configure:5373: mpicc -E conftest.c
conftest.c:53:10: fatal error: gpfs.h: No such file or directory
53 | #include <gpfs.h>
| ^~~~~~~~
compilation terminated.
configure:5373: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_LIBINTL_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_STATFS_H 1
| #define HAVE_SYS_STATVFS_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_MOUNT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_WCHAR_H 1
| #define HAVE_SYSCONF 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_MEMSET 1
| #define HAVE_MKDIR 1
| #define HAVE_PUTENV 1
| #define HAVE_REALPATH 1
| #define HAVE_REGCOMP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRCHR 1
| #define HAVE_STRERROR 1
| #define HAVE_STRNCASECMP 1
| #define HAVE_STRSTR 1
| #define HAVE_UNAME 1
| #define HAVE_STATFS 1
| #define HAVE_STATVFS 1
| /* end confdefs.h. */
| #include <gpfs.h>
configure:5373: result: no
configure:5373: checking for gpfs.h
configure:5373: result: no
configure:5373: checking gpfs_fcntl.h usability
configure:5373: mpicc -c -g -O2 conftest.c >&5
conftest.c:86:10: fatal error: gpfs_fcntl.h: No such file or directory
86 | #include <gpfs_fcntl.h>
| ^~~~~~~~~~~~~~
compilation terminated.
configure:5373: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_LIBINTL_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_STATFS_H 1
| #define HAVE_SYS_STATVFS_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_MOUNT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_WCHAR_H 1
| #define HAVE_SYSCONF 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_MEMSET 1
| #define HAVE_MKDIR 1
| #define HAVE_PUTENV 1
| #define HAVE_REALPATH 1
| #define HAVE_REGCOMP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRCHR 1
| #define HAVE_STRERROR 1
| #define HAVE_STRNCASECMP 1
| #define HAVE_STRSTR 1
| #define HAVE_UNAME 1
| #define HAVE_STATFS 1
| #define HAVE_STATVFS 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <gpfs_fcntl.h>
configure:5373: result: no
configure:5373: checking gpfs_fcntl.h presence
configure:5373: mpicc -E conftest.c
conftest.c:53:10: fatal error: gpfs_fcntl.h: No such file or directory
53 | #include <gpfs_fcntl.h>
| ^~~~~~~~~~~~~~
compilation terminated.
configure:5373: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "ior"
| #define PACKAGE_TARNAME "ior"
| #define PACKAGE_VERSION "4.1.0+dev"
| #define PACKAGE_STRING "ior 4.1.0+dev"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define META_NAME "ior"
| #define META_VERSION "4.1.0+dev"
| #define META_RELEASE "0"
| #define META_ALIAS "ior-4.1.0+dev-0"
| #define HAVE_MPI 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_LIBINTL_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_STATFS_H 1
| #define HAVE_SYS_STATVFS_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_MOUNT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_WCHAR_H 1
| #define HAVE_SYSCONF 1
(this is only half, full output is too long, continued in comment)
Looks like it is missing a few imports? I'm not sure if I am missing a set up step but any guidance would be greatly appreciated.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the reported ./configure invocation after ./bootstrap and inspect how the --with-lustre option checks for lustre/lustre_user.h. Compare the configuration behavior across 3.2.1, rc, and main, using the provided config.log and AWS ParallelCluster environment details. Done means identifying a reproducible project-side resolution or documenting that the required header is an external prerequisite.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- aws, c
- Domain
- build-system, hpc
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 28/100