higlass / higlass/higlass-server

Installation errors on Red Hat 8

Open
#161 7 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
22
Forks
22
PR merge metrics
No merged PRs in 30d

Description

I'm trying to install higlass-server on a Red Hat 8 system.

Steps :
1. I cloned the most recent version of this repo (e.g. cbfe79fe)
2. Installed Miniconda
3. Sourced /path/to/miniconda/etc/profile.d/conda.sh
4. Ran `conda env create -f environment.yml`

It failed with about 4000 lines of output (see attached).

The first 'useful' error I see is something like this :

```
gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’ [-Wbuiltin-declaration-mismatch]
int exp (void);
^~~
gcc -pthread -B /export/apps/opt/higlass-server/1.14.8/en
[higlass-server-issue.txt](https://github.com/higlass/higlass-server/files/8893075/higlass-server-issue.txt)
vs/higlass-server/compiler_compat _configtest.o -o _configtest
/export/apps/opt/higlass-server/1.14.8/envs/higlass-server/compiler_compat/ld: _configtest.o: in function `main':
_configtest.c:(.text.startup+0x5): undefined reference to `exp'
collect2: error: ld returned 1 exit status
failure.
```

Question :
1. What suggestions do you have in resolving this error?

Contributor guide

No contributing guide indexed for this repository

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.