aggregate bedpe not working when output file is not specified
Open
- Dominant language
- Python
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Description
According to the help text
```bash
-o, --output-file TEXT The default output file name to use. If this
isn'tspecified, clodius will replace the current
extensionwith .bed2db
```
but when I do
```bash
clodius aggregate bedpe -a hg38 --has-header outrageously-awesome-stuff.bedpe
```
I only see
```bash
output_file: None
plain
```
while I would expect get
```
outrageously-awesome-stuff.bed2ddb
```
but instead I get
```
outrageously-awesome-stuff.bedpe.multires.db
```
therefore I am
```
🤔
```
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