Add more optional arguments to command line interface for make_peaks

zscores is configured to take almost all of the optional arguments through the command line, but currently make_peaks only takes a few. It would be great to add some of the optional arguments for make_peaks to the argparser so that they can be accessed by users interacting with this module from the command line.

To get a sense of what this looks like check out zscores.py. I was envisioning that we could add some of the optional arguments for both thresh_peaks and hmm_peaks!

Please reach out with questions if you get stuck!

Start by reading zscores.py to see how its argparse options map to analysis functions, then locate the make_peaks command-line entry point. Compare the optional arguments accepted by thresh_peaks and hmm_peaks with those exposed by make_peaks. Done means the selected optional arguments are available through the make_peaks CLI and work for both peak-finding paths.

Written by the indexing model from the issue text.