grunwaldlab / grunwaldlab/metacoder
`plot_taxonomy`: add option to control plot quality
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heat tree rewrite
- Dominant language
- R
- Stars
- 148
- Forks
- 30
- PR merge metrics
- No merged PRs in 30d
Description
This option should be a number, 1 by default, that determines:
- How much effort is put into vertex size optimization (slow for large graphs currently)
- How much effort is put into layout generation
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start at the plot_taxonomy entry point and trace how vertex size optimization and layout generation are configured. Define how a numeric quality option, defaulting to 1, affects both efforts, then verify that higher or lower values change those behaviors without altering existing defaults.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- data-visualization
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100