grunwaldlab / grunwaldlab/metacoder
Look into treeio for parsing phylogenetic file formats
Open
Nobody has claimed this yet.
Priority: High
Status: Pending
Type: Enhancement
- Dominant language
- R
- Stars
- 148
- Forks
- 30
- PR merge metrics
- No merged PRs in 30d
Description
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Read the linked treeio vignette, focusing on its parsing of BEAST output and the file formats it supports. Then inspect metacoder’s existing tree and file-import paths to determine what integration would involve; the issue names no files, tests, entry points, or completion criteria.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100