grunwaldlab / grunwaldlab/metacoder
filter_taxa collides with command in phyloseq package
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- Dominant language
- R
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- 148
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Description
fyi. the phyloseq package also has a filter_taxa() command, so when I tried run the vignette, i got an error. After searching help on filter_taxa, i realised that i just needed to use metabarcoder::filter_taxa.
might be worth editing this in your vignette.
lovely package!
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First steps
- Read the whole issue, then the project's contributing guide.
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- Fork the repository and make your change on a branch.
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Research direction
Find the vignette example that calls filter_taxa and check how the command is resolved alongside phyloseq. Update the example to use metabarcoder::filter_taxa, then rerun the vignette to confirm the command collision is gone.
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Assessment
- Tech stack
- r
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 1/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100