grunwaldlab / grunwaldlab/metacoder
Add parser for SILVA taxonomy files
Open
Nobody has claimed this yet.
Priority: Medium
Status: On Hold
Type: Enhancement
- Dominant language
- R
- Stars
- 148
- Forks
- 30
- PR merge metrics
- No merged PRs in 30d
Description
These are different than the FASTA release
https://www.arb-silva.de/no_cache/download/archive/release_128/Exports/taxonomy/
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue provides only the SILVA release-128 taxonomy archive URL; begin by inspecting that format and locating the repository’s current parsing entry points. Done means a parser for these taxonomy files is integrated and its behavior is covered by tests, but the issue does not name files or test locations.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100