grunwaldlab / grunwaldlab/metacoder
Look into ape nexus parser/converter
Open
Nobody has claimed this yet.
Priority: Medium
Status: On Hold
Type: Enhancement
- Dominant language
- R
- Stars
- 148
- Forks
- 30
- PR merge metrics
- No merged PRs in 30d
Description
I might be able to use the nexus parser in ape and a converter function to parse nexus files.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing how metacoder currently accepts and parses data, then investigate whether ape's nexus parser can provide the needed input. Define the converter's expected input and output before implementing; done means nexus files can be parsed into the project's expected representation.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100