griffithlab / griffithlab/pVACtools
pVACseq stability predictions are not performed locally with --netmhc-stab
Open
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 188
- Forks
- 81
- Avg merge
- 9d 17h
- Merged PRs (30d)
- 6
Description
Would it be possible to run netMHCstab on the local machine and not submitting the jobs to the netMHCstab remote server?
The same would apply to netChop.
Thanks
Dietmar
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the pVACseq entry points that handle --netmhc-stab and the corresponding netChop integration, then trace where jobs are submitted to their remote servers. The issue is done when both stability prediction tools can run locally instead of submitting jobs remotely, with the supported invocation and behavior documented.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100