griffithlab / griffithlab/pVACtools
Add ability to run the reference proteome step on the full peptide sequence in a fasta
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- Dominant language
- Python
- Stars
- 188
- Forks
- 81
- Avg merge
- 9d 17h
- Merged PRs (30d)
- 6
Description
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Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
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- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the reference proteome step in the pVACtools code and tracing how peptide sequences are read from FASTA input. Clarify the expected behavior for running that step on the full peptide sequence, then add coverage showing the full-sequence case is processed successfully.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100