griffithlab / griffithlab/pVACtools
Add retry when calls to standalone IEDB fail
Open
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 188
- Forks
- 81
- Avg merge
- 9d 17h
- Merged PRs (30d)
- 6
Description
when request data from NetMHC,NetMHCIIpan,NetMHCcons,NetMHCpan, the program may stop of request error, but can recue when rerun, so is it convenient for you to add retry functions like https://github.com/jd/tenacity
Thanks a lot
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the request paths for NetMHC, NetMHCIIpan, NetMHCcons, and NetMHCpan, then inspect how request errors currently stop execution. The issue is done when temporary request failures retry instead of requiring a rerun, while persistent failures still receive appropriate handling.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100