griffithlab / griffithlab/pVACtools
Investigate use of igv-reports for genomic review of candidates
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grant
- Dominant language
- Python
- Stars
- 188
- Forks
- 81
- Avg merge
- 9d 17h
- Merged PRs (30d)
- 6
Description
https://github.com/igvteam/igv-reports
Would be amazing if we could link out from pvacview rows to pre-generated igv-report files showing the DNA/RNA support for each variant.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the linked igv-reports project and inspect how pVACview rows are produced. Determine where pre-generated IGV report files could be associated with candidate variants and linked from each row. Done means reviewers can open the relevant report for DNA/RNA support from a pVACview row.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 28/100