griffithlab / griffithlab/pVACtools
Investigate PUFFIN algorithm
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prediction_algorithms
- Dominant language
- Python
- Stars
- 188
- Forks
- 81
- Avg merge
- 9d 17h
- Merged PRs (30d)
- 6
Description
As discussed at recent Immunotherapy Tumor Board meeting, Max Artyomov, mentioned this algorithm as promising: https://pubmed.ncbi.nlm.nih.gov/31176619/
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the linked PubMed paper on the PUFFIN algorithm and comparing its requirements with pVACtools. The issue names no files, tests, or entry points, and completion criteria are not defined; clarify whether the goal is an implementation, an integration, or an evaluation before proceeding.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100