griffithlab / griffithlab/pVACtools
Refactor NetMHCstabpan step to not use web form
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enhancement
- Dominant language
- Python
- Stars
- 188
- Forks
- 81
- Avg merge
- 9d 17h
- Merged PRs (30d)
- 6
Description
NetMHCstabpan is now part of the IEDB MHC I package as well as the IEDB API so we should transition to using those instead of the web form.
Original issue: https://github.com/griffithlab/pVAC-Seq/issues/248
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the existing NetMHCstabpan web-form integration and its callers, then review the IEDB MHC I package and API interfaces referenced in the issue. Done means the workflow uses those supported interfaces instead of the web form, with the relevant integration checks still passing.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- api, backend
- Issue type
- Refactor
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100