griffithlab / griffithlab/pVACtools
Incorporate Patient Harmonic-mean Best Rank (PHBR) into class I report
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grant
- Dominant language
- Python
- Stars
- 188
- Forks
- 81
- Avg merge
- 9d 17h
- Merged PRs (30d)
- 6
Description
The Patient Harmonic-mean Best Rank (PHBR) score is highly influenced by the best allele but also integrates information about presentation by the other alleles.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No file, test, or entry point is named. Start by reading the linked PHBR paper and locating the current class I report implementation; done means the report incorporates the PHBR score with behavior covered by suitable tests.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100