griffithlab / griffithlab/pVACtools
Move stability and cleavage site predictions to the all epitopes report
Open
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 188
- Forks
- 81
- Avg merge
- 9d 17h
- Merged PRs (30d)
- 6
Description
This is desired to get the information into the aggregated report. We need some testing to see how fast we can make it with parallelization and standalone blast.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Locate the all epitopes report and the existing stability and cleavage site prediction paths. Benchmark the current approach against parallelization and standalone BLAST, then define completion as including both predictions in the aggregated report with tests documenting acceptable runtime and output.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100