griffithlab / griffithlab/pVACtools

Investigate steps needed to create a phased VCF of somatic variants only

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@jhundal is already working on this.

Since Dec 22, 2020.

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Description

Some users might not have germline calls or normal sample data available but would like to still take advantage of at least incorporating proximal somatic variants. We should investigate the steps needed to create such a VCF and write up instructions in our documentation for it.

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