griffithlab / griffithlab/pVACtools
Implement a "recommended Ensembl version"
Open
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 188
- Forks
- 81
- Avg merge
- 9d 17h
- Merged PRs (30d)
- 6
Description
This would be pinned to each minor version. Output a warning if a input VCF was annotated with a different version.
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No files, tests, or entry points are named. Start by locating where minor-version configuration is defined and where input VCF annotation metadata is read; then determine how to associate a recommended Ensembl version with each minor release. Done means mismatched annotation versions produce a warning while matching versions do not.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100