griffithlab / griffithlab/pVACtools
Investigate supporting stop_lost variants
Open
Nobody has claimed this yet.
grant
- Dominant language
- Python
- Stars
- 188
- Forks
- 81
- Avg merge
- 9d 17h
- Merged PRs (30d)
- 6
Description
This issue has no description.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the pVACtools variant-handling entry points and existing support for other variant types, then trace how stop_lost variants are represented and processed. The issue does not name files, tests, or acceptance criteria, so done would require defining the supported stop_lost variants and validating their end-to-end handling.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100