griffithlab / griffithlab/pVACtools
Implement a pathogen similarity score
Open
Nobody has claimed this yet.
feature addition
grant
- Dominant language
- Python
- Stars
- 188
- Forks
- 81
- Avg merge
- 9d 17h
- Merged PRs (30d)
- 6
Description
Test candidate peptides for similarity to known immunogenic peptides (e.g. in IEDB) and report this feature.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No file, test, or entry point is named. First clarify how candidate peptides and known immunogenic peptides from IEDB should be represented and compared, including the expected score and report format. Done means the tool calculates and reports the agreed pathogen-similarity feature.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100