griffithlab / griffithlab/pVACtools
investigate possibility of integrating neopepsee predictions
Open
Nobody has claimed this yet.
feature addition
prediction_algorithms
- Dominant language
- Python
- Stars
- 188
- Forks
- 81
- Avg merge
- 9d 17h
- Merged PRs (30d)
- 6
Description
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the linked PubMed paper and the Neopepsee source on SourceForge, then compare their prediction inputs and outputs with pVACtools. Done means establishing whether integration is feasible and documenting a concrete scope or explaining why it is not, since the issue names no pVACtools files or tests.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100